CDS

Accession Number TCMCG016C07061
gbkey CDS
Protein Id OMO89824.1
Location complement(join(25610..25747,25937..26428,26720..29731))
Organism Corchorus capsularis
locus_tag CCACVL1_07605

Protein

Length 1213aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01008578.1
Definition hypothetical protein CCACVL1_07605 [Corchorus capsularis]
Locus_tag CCACVL1_07605

EGGNOG-MAPPER Annotation

COG_category A
Description Splicing factor 3B subunit
KEGG_TC -
KEGG_Module M00352        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12830        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005689        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009555        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009846        [VIEW IN EMBL-EBI]
GO:0009856        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009895        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035670        [VIEW IN EMBL-EBI]
GO:0042176        [VIEW IN EMBL-EBI]
GO:0042177        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044706        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048438        [VIEW IN EMBL-EBI]
GO:0048440        [VIEW IN EMBL-EBI]
GO:0048467        [VIEW IN EMBL-EBI]
GO:0048481        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0055046        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071005        [VIEW IN EMBL-EBI]
GO:0071011        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTATCTCTACAACCTAACACTCCAGCAAGCCACCGGCATCGTCGCCGCCATTAATGGCAACTTCTCCGGCAGCAAAGTTCAAGAAATCGTCGTCGCCCGTGGCAAGATCCTTTCCCTCCTCCGACCCGACGATCTCGGTAAGCTCCAAACTCTTCACTCCGTTGAGATATTCGGTGCCATTCGTTCCTTAGCTCAGTTTCGTTTAACTGGAGCACAAAAAGACTACATAGTTGTCGGGTCTGATTCGGGTCGGATTGTTATTCTCGAATACAATAAAGAGAAGAATGTGTTCGATAAAGTTCACCAAGAAACTTTTGGGAAATCTGGGTGTCGCCGGATTGTCCCAGGTCAATATTTAGCTATAGACCCTAAAGGAAGAGCTGTTATGATTGGAGCGTGTGAGAAGCAGAAGTTAGTTTATGTTCTCAATAGGGATACAGCTGCTAGGTTAACTATATCCTCGCCTTTAGAGGCTCATAAGTCGCATACGATAGTTTACTCGATTTGTGGTGTTGATTGTGGTTTTGATAACCCTATTTTTGCTGCTATTGAGTTGGACTACTCAGAGGCCGATCAGGATTCCTCAGGGCAGGCTGCTAATGAGGCACAGAAGCATTTGACGTTTTATGAACTTGATTTAGGGCTTAATCATGTGTCCAGGAAGTGGTCAGAACAGGTTGACAATGGGGCGAATATGTTGGTCACAGTGCCTGGTGGTGGTGATGGGCCGAGTGGGGTTTTAGTTTGTGCAGAAAATTTTGTTATTTATAAGAATCAGGGGCATCCAGACATTAGGGCAGTAATTCCTAGAAGAGCTGATTTGCCAGCGGAACGTGGGGTGTTGATTGTTTCAGCTGCTACACATAAGCAGAAGTCAATGTTTTTCTTCCTTTTGCAAACAGAGTATGGTGATATTTTTAAGGTTACTTTGGTGCACGGAGATGAGGGTGTTACAGAGCTGAAGATTAAGTATTTTGATACGATTCCAGTTACAGCTTCAATGTGTGTGTTGAAAACTGGTTTTCTGTTTGCGGCTTCTGAGTTTGGGAATCATGGTTTGTATCAGTTTCAGGCTATTGGGGATGAGCCTGATGTTGAGTCTTCATCTTCTACATTAATGGAAACAGAAGAAGGTTTCCAGCCAGTGTTTTTCCAGCCTAGAGGGCTTAAGAATCTAGTTAGGATTGACCAAGCTGAAAGCTTGATGCCAATAATGGACATGAAAATTGCTAATCTTTTTGAGGAAGAAACACCTCAGATATTTTCATTATGTGGACGTGGTCCTCGTTCTTCTTTGAGGATACTTAGGCCCGGGTTGGCCATCAGTGAAATGGCTGTCTCACAGCTTCCTGGTGTCCCTAGTGCTGTTTGGACTGTGAAAAAGAATGTTAATGATGCCTTTGATGCATACATTGTTGTGTCATTTGCCAATGCAACTCTTGTTCTTTCTATTGGTGAAACAGTTGAAGAAGTGAGTGATAGTGGGTTTCTTGATACTACTCCGTCTCTTGCTGTTTCCTTGATTGGTGATGATTCGCTGATGCAAGTTCACCCAAATGGTATCAGGCATATTAGGGAAGACGGACGAATCAACGAGTGGAGAACTCCTGGGAAAAGGACAATTGTTAAGGTTGGCTCAAATGGCCTTCAAGTGGTTATTGCATTGAGTGGAGGGGAGCTTATATATTTTGAGGTCGATATGACTGGGCAACTGATGGAAGTGGAGAAGCATGAAATGTCTGGTGATGTGGCTTGTCTAGACATTGCCCCTGTTCCTGAAGGAAGACAGAGGTCCCGTTTTCTTGCAGTCGGTTCATATGATAATACAATTCGTATATTGTCGCTGGATCCTGATGATTGCATGCAAGTTCTGAGTGTACAGAGTGTGTCTTCACCTCCTGAGTCTCTCCTTTTCCTTGAAGTTAAGGCATCTGTGGGTGGAGAGGATGGTGCTGATCACCCTGCCAGCCTTTTCCTTAATGCTGGTCTGCAGAATGGAGTCCTATTCCGAACAGTTGTGGACATGGTTACGGGACAGCTTTCTGATTCCCGTTCACGATTCCTAGGGCTGAGAGCCCCAAAGTTGTTCTCTGTTAAAGTGAGGGGCCGACCTGCAATGCTTTGCTTGTCCAGTCGACCATGGCTTGGTTATATTCACCAAGGACATTTTCTGCTCACACCCCTTTCTTATGAGACACTTGAATTTGCTGCCTCGTTTTCATCAGATCAGTGTGCTGAAGGTGTTGTTGCTGTTGCTGGGGATGCATTGAGGGTTTTCACCATTGAGCGTCTTGGGGAAACCTTTAATGAGACTGCCATTCCCTTGAGGTATACTCCTAGGAAATTTGTTCTGCAACCCAAGCGAAAATTGTTGGTTATTATTGAGAGTGACCAAGGATCATATACTGCTGAAGAGCGTGAAGCTGCAAGGAAGGAGTGCTTTGAGGCTGCTGGGATGGGGGAAAATGGTAATGGTAATGTGGATCGGATGGAAAATGGCGATGATGAGGACAAAGAGGATCCTCTCTCTGATGAGCAGTATGGTTATCCGAAGGTCGAGTCAGACAAGTGGGTTTCTTGCATTAGAGTTCTTGATCCGAGGACATCTACCACAACCTGTCTTTTGGAGCTTCAGGACAATGAAGCTGCTTTTAGTGTGTGCACTGTGAACTTCCATGATAAAGAGTATGGGACTCTTTTGGCTGTTGGCACCGCCAAGGGTCTGAAGTTTTGGCCCAAAAGAAGTCTAGCTGCAGGTTTTATTCATATTTATAGGTTTCTGGAAGATGGCAAATCGCTTGAGCTTCTTCACAAGACACAAGTGGAAGGTGTTCCTCTTGCTTTATGCCAGTTTCAGGGAAGATTACTTGCTGGGATAGGACCTGTGCTCCGATTGTATGACTTGGGGAAAAAAAGACTGCTTCGGAAATGTGAGAATAAGCTTTTCCCTAACACTATTGTCACCATTCACACTTATCGTGATCGAATATATGTTGGGGACATACAAGAGTCATTTCATTTTTGCAAGTACCGGAGGGATGAAAATCAACTGTATATATTTGCTGACGATGTTGTTCCAAGATGGCTTACTGCGTCTTATCATATTGATTTTGACACCATGGCTGGCGCCGATAAGTTTGGGAACGTGTATTTTGTGCGGCTACCCCAGGATGTATCAGATGAGATAGAAGAAGACCCAACTGGTGGAAAGATAAAGTGGGAGCAAGGGAGGCTCAATGGAGCTCCTAACAAGGTAGAGGAGATAGTTCAGTTTCATGTTGGGGATGTGGTCACTTCCTTGCAGAAGGCATCCTTGATACCAGGTGGTGGGGAGTGTCTTCTCTATGGAACAGTGATGGGAAGCTTGGGGGCATTGCTTCCATTCACTTCCCGCGATGATGTTGACTTCTTTTCTCACCTAGAGATGCATATGAGACAAGAACACCCTCCCTTGTGTGGACGAGATCATATGGCGTATAGATCTGCTTATTTCCCTGTGAAGGATGTGATCGATGGGGACTTGTGTGAGCAGTTTCCTACCCTGCCGTTAGACCTGCAAAGGAAAATTGCAGATGAGTTGGATCGGACTCCTGGGGAGATACTGAAGAAACTGGAAGAAGCCCGGAACAAGATTATTTGA
Protein:  
MYLYNLTLQQATGIVAAINGNFSGSKVQEIVVARGKILSLLRPDDLGKLQTLHSVEIFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPIFAAIELDYSEADQDSSGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLVHGDEGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHGLYQFQAIGDEPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDAFDAYIVVSFANATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASVGGEDGADHPASLFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIHQGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTPRKFVLQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNVDRMENGDDEDKEDPLSDEQYGYPKVESDKWVSCIRVLDPRTSTTTCLLELQDNEAAFSVCTVNFHDKEYGTLLAVGTAKGLKFWPKRSLAAGFIHIYRFLEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIVTIHTYRDRIYVGDIQESFHFCKYRRDENQLYIFADDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRLNGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECLLYGTVMGSLGALLPFTSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGEILKKLEEARNKII